PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01558_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 245aa    MW: 27707.2 Da    PI: 9.2742
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01558_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.93.2e-071059154
                                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                         HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                                r++ +  rE+ RRdr+ + f eL   l ++     +K++Ka++L  +++ +k+L
  Cotton_A_01558_BGI-A2_v1.0 10 RKVQKADREKLRRDRLTEQFLELGNTLDPD----RPKNEKATVLVGTIQMLKDL 59
                                5677889********************997....79***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.344959IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-51059IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.44E-41063No hitNo description
SuperFamilySSF474594.06E-101078IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-91082IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0071565IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEAEDPIAAR KVQKADREKL RRDRLTEQFL ELGNTLDPDR PKNEKATVLV GTIQMLKDLT  60
AEVNRLKAER SSLAEESREL TQENNELREE KASVKANIEN LTVQYQQRRM MVFPWTGIDF  120
SSVMAPPYPY PVPLPVTTGP IIMHPSLQPY PFFGNHNPGA INNPCSTFMP YSTTTSNPLI  180
EQPSSQYTSS YHTSGKRDSK SKSADHQRGS NRESNGSNNV RTKVELKNPG SSTNEVRFII  240
PQRML
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469334.11e-146PREDICTED: transcription factor bHLH121-like
TrEMBLA0A0D2REQ41e-147A0A0D2REQ4_G
STRINGGLYMA07G26910.11e-100(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.12e-56bHLH family protein